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Publication Categories - Under Construction
(Semantic Web, Machine Learning, Medical Informatics, Bioinformatics)

Semantic Web

  • Nansu Zong, Sungin Lee, Jinhyun Ahn, Hong-Gee Kim. Supporting inter-topic entity search for biomedical Linked Data based on heterogeneous relationships. Computers in Biology and Medicine, Volume 87, 1 August 2017, Pages 217–229. link
  • Junho Park, Min-Ji Kim, Eung-Hee Kim, Sungkwon Yang, Sungin Lee, Jin-Muk Lim, Hyunwhan Joe, Kyung-Sik Ha, and Hong-Gee Kim, 'BiDIP: a Biological Data Integration Platform for Transcriptome Analysis', In: Proceedings of the First International Workshop on Biomedical Data Integration and Discovery (BMDID 2016). link
  • Jinhyun Ahn, Dong-Hyuk Im, Hong-Gee Kim. A MapReduce-Based Approach for Prefix-Based Labeling of Large XML Data. In: Li YF. et al. (eds) Semantic Technology. JIST 2016. Lecture Notes in Computer Science, vol 10055. Springer, Cham: 83-98. link
  • Jinhyun Ahn, "Optimization Techniques for 2-hop Labeling of Dynamic Directed Acyclic Graphs", In: Proceedings of the Doctoral Consortium at the 15th International Semantic Web Conference (ISWC 2016). link
  • Jinhyun Ahn, Dong-Hyuk Im, Taewhi Lee, Hong-Gee Kim, "Parallel Prime Number Labeling of Large XML Data Using MapReduce", In: 2016 6th International Conference on IT Convergence and Security (ICITCS). link
  • 안진현, 임동혁, 김홍기, "RDB 뷰 정의로부터 상하위 관계를 추출하는 스파크 기반 시스템 설계", 한국정보처리학회 춘계학술대회, 대한민국, April 29 ~ 30 2016. link
  • 안진현, 양성권, 이문환, 임동혁, 김홍기, "Jena-Impala: 임팔라를 활용한 Jena 프레임워크 기반의 트리플 저장소 구현", 한국컴퓨터종합학술대회, 대한민국, June 29 ~ July 01 2016. link
  • Zong, N., Nam, S., Eom, J.-H., Ahn, J., Joe, H., & Kim, H.-G. 2015. Aligning ontologies with subsumption and equivalence relations in Linked Data. Knowledge-Based Systems, 76, 30-41. link
  • Zong N, Lee S, Kim H G. Discovering expansion entities for keyword-based entity search in linked data [J]. Journal of Information Science, 2015: 0165551514562704. link
  • Jinhyun Ahn, Dong-Hyuk Im, and Hong-Gee Kim, "SigMR: MapReduce-based SPARQL Query Processing by Signature Encoding and Multi-way Join", The Journal of Supercomputing, October 2015, Volume 71, Issue 10, pp 3695-3725. link
  • Jinhyun Ahn, Jae-Hong Eom, Sejin Nam, Nansu Zong, Dong-Hyuk Im, and Hong-Gee Kim, 'A Design of Federated SPARQL Engine for Temporal Query Processing', The 2015 World Congress on Information Technology Application and Services,Hyatt Regency Jeju, Korea, February 24-26 2015.
  • Sungkwon Yang, Hyunwhan Joe and Hong-Gee Kim. A Model for Explaining Ontology Properties based on PropBank. The 5th Joint International Semantic Technology (JIST) conference, November 11-13, Yichang, Hubei. (Demo Track)
  • Gayathri Nadarajan, Kyungsik Ha and Hong-Gee Kim. Modelling Mutation Analysis for Epigenomics with Planning and Semantics. The 5th Joint International Semantic Technology (JIST) conference, November 11-13, Yichang, Hubei. (SEMBI Workshop)
  • 안진현, 양성권, 이문환, 정진욱, 김응희, 임동혁, 김홍기, 'MongoDB를 활용한 Jena프레임워크 기반의 분산 트리플 저장소 구현', 한국정보처리학회 추계학술대회,제주한라대학교, Korea, September 30-31 2015.
  • 안진현, 임동혁, 양성권, 이문환, 김홍기. 맵리듀스를 활용한 XML 데이터에 대한 소수 레이블링 알고리즘 설계. 한국산학기술학회추계학술대회. December 18-19, 2015.
  • 양성권, 조현환, 안진현, 이문환, 김홍기. 온톨로지와 자연어 처리 기술 간의 의미적 격차 해소를 위한 의미적 연결 모델에 대한 연구. 한국산학기술학회추계학술대회.December 18-19, 2015.
  • Sejin Nam, Sungin Lee, James G. Boram Kim, Hong-Gee Kim. STEP: An ontology-based smart clinical document template editing and production system. Expert Systems with Applications, 41, 3005-3015. link
  • Jinhyun Ahn, Dong-Hyuk Im, Jae-Hong Eom, Nansu Zong, and Hong-Gee Kim, G-Diff: A Grouping Algorithm for RDF Change Detection on MapReduce. The 4th Joint International Semantic Technology (JIST) conference, November 9-11, Chiang Mai, Thailand. link
  • Se-Jin Nam, Jinhyun Ahn, Jin-Muk Lim, Jae-Hong Eom, Ju-Hong Jeon, and Hong-Gee Kim, Federating Heterogeneous Biological Resources on the Web: A Case Study on TRP Channel Ontology Construction. The 3rd Joint International Semantic Technology (JIST) conference, November 28-30, 2013, Seoul, Korea. link
  • Nansu Zong, Sungin Lee, and Hong-Gee Kim, A Comparison of Unsupervised Taxonomical Relationship Induction Approaches for Building Ontology in RDF Resources. The 3rd Joint International Semantic Technology (JIST) conference, November 28-30, 2013, Seoul, Korea. link
  • 이민아, 정진욱, 김응희, 김홍기,빅데이터 활용을 위한 클라우드 기반의 링크드 데이터 인덱싱 시스템,한국 정보 처리 학회,2013

Machine Learning

  • Sejin Nam, Senator Jeong, Sang-Kyun Kim, Hong-Gee Kim, Victoria Ngo, Nansu Zong. Structuralizing biomedical abstracts with discriminative linguistic features. Computers in Biology and Medicine, 1 December 2016, Volume 79, pp 276-285. link
  • Eung-Hee Kim, Hong-Gee Kim, Suk-Hyung Hwang and Sung-In Lee, FARM: An FCA-based Association Rule Miner. Knowledge-Based Systems, Volume 85, September 2015, 277–297. link program
  • Jimin Kahng, Eung-Hee Kim, Hong-Gee Kim, and Wonbae Lee, Development of a cervical cancer progress prediction tool for human papillomavirus-positive Koreans: A support vector machine-based approach, Journal of International Medical Research, 43(4), 518-525 August 2015. link
  • Soo-Kyoung Lee, Youn-Jung Son, Jeongeun Kim, Hong-Gee Kim, Jae-Il Lee, Bo-Yeong Kang, Hyeon-Sung Cho, Sungin Lee. Prediction Model for Health-Related Quality of Life of Elderly with Chronic Diseases using Machine Learning Techniques. Healthcare Informatics Research, 20(2), 125~134. link
  • Harshit Kumar, Sungin Lee, Hong-Gee Kim. Exploiting social bookmarking services to build clustered user interest profile for personalized search. Information Sciences, 281, 399-417. link
  • Soo Kyoung Lee, Bo-Yeong Kang, Hong-Gee Kim, Youn-Jung Son. Predictors of Medication Adherence in Elderly Patients with Chronic Diseases Using Support Vector Machine Models. Healthcare Informatics Research, 19(1), 33-41. link
  • Hyeon Sung Cho, Rock Won Kim, Yun Kyeong Park, Jong Hyeon Park, Hong-Gee Kim, Adverse Drug Event Mining Using Mobile Phone. International Conference on ICT Convergence 2013, October 14-16, 2013, Jeju Island, Korea. link
  • 이수경, 김정은, 손연정, 김홍기, 조현성, Development of Prediction Model for Health-related Quality of Life in Elderly with Chronic Diseases based on Machine Learning, 대한의료정보학회 추계학술대회 2013.

Medical Informatics

  • Nansu Zong, Sungin Lee, Jinhyun Ahn, Hong-Gee Kim. Supporting inter-topic entity search for biomedical Linked Data based on heterogeneous relationships. Computers in Biology and Medicine, Volume 87, 1 August 2017, Pages 217–229. link
  • Kyungsik Ha, Hong-Gee Kim, Hwajin Lee. Chromatin marks shape mutation landscape at early stage of cancer progression. npj genomic medicine, 2, 9 (2017). link
  • Pil-Jong Kim, Ji Y. Park, Hong-Gee Kim, Yong Mee Cho, Heounjeong Go. Dishevelled segment polarity protein 3 (DVL3): a novel and easily applicable recurrence predictor in localised prostate adenocarcinoma. BJU Int., 10 February 2017. link
  • Sejin Nam, Senator Jeong, Sang-Kyun Kim, Hong-Gee Kim, Victoria Ngo, Nansu Zong. Structuralizing biomedical abstracts with discriminative linguistic features. Computers in Biology and Medicine, 1 December 2016, Volume 79, pp 276-285. link
  • Mihee Hong, Yoon-Ah Kook, Myeng-Ki Kim, Jae-Il Lee, Hong-Gee Kim, Seung-Hak Baek. The Improvement and Completion of Outcome index: A new assessment system for quality of orthodontic treatment. Korean J Orthod. 2016 Jul;46(4):199-211. link
  • Pil-Jong Kim, Hong-Gee Kim, Gyu-Jeong Noh, Yong-Seo Koo, Teo Jeon Shin. Usefulness of permutation entropy as an anesthetic depth indicator in children. Journal of Pharmacokinetics and Pharmacodynamics. link
  • Heon-Mook Park, Pil-Jong Kim, Hong-Gee Kim, Sukwha Kim, Seung-Hak Baek. Prediction of the Need for Orthognathic Surgery in Patients With Cleft Lip and/or Palate. Journal of Craniofacial Surgery, vol26, Number 4, June 2015. link
  • Jimin Kahng, Eung-Hee Kim, Hong-Gee Kim, and Wonbae Lee, Development of a cervical cancer progress prediction tool for human papillomavirus-positive Koreans: A support vector machine-based approach, Journal of International Medical Research, 43(4), 518-525 August 2015. link
  • Pil-Jong Kim, Hong-Gee Kim, and Byeong-Hoon Cho. Evaluation of electrical impedance ratio measurements in accuracy of electronic apex locators. Restorative Dentistry & Endodontics, 40(2):113-122. June 2015. link
  • Yee Suk Kim, Sungin Lee, Nansu Zong, and Jimin Kahng. Clinical progress by human papillomavirus genotypes and their persistent infection in subjects with atypical squamous cells of undetermined significance cytology: statistical and latent dirichlet allocation analysis. Experimental and Therapeutic Medicine
  • Soo-Kyoung Lee, Youn-Jung Son, Jeongeun Kim, Hong-Gee Kim, Jae-Il Lee, Bo-Yeong Kang, Hyeon-Sung Cho, Sungin Lee. Prediction Model for Health-Related Quality of Life of Elderly with Chronic Diseases using Machine Learning Techniques. Healthcare Informatics Research, 20(2), 125~134. link
  • Sejin Nam, Sungin Lee, James G. Boram Kim, Hong-Gee Kim. STEP: An ontology-based smart clinical document template editing and production system. Expert Systems with Applications, 41, 3005-3015. link
  • Pil-Jong Kim, Byeong-Hoon Cho, Application of the Water Subtraction Algorithm in Determining the Degree of Conversion of Self-etching Adhesives, The Journal of Adhesive Dentistry, 15(6), 527-534. link
  • Soo Kyoung Lee, Bo-Yeong Kang, Hong-Gee Kim, Youn-Jung Son. Predictors of Medication Adherence in Elderly Patients with Chronic Diseases Using Support Vector Machine Models. Healthcare Informatics Research, 19(1), 33-41. link
  • Hyeon Sung Cho, Rock Won Kim, Yun Kyeong Park, Jong Hyeon Park, Hong-Gee Kim, Adverse Drug Event Mining Using Mobile Phone. International Conference on ICT Convergence 2013, October 14-16, 2013, Jeju Island, Korea. link
  • 이수경, 김정은, 손연정, 김홍기, 조현성, Development of Prediction Model for Health-related Quality of Life in Elderly with Chronic Diseases based on Machine Learning, 대한의료정보학회 추계학술대회 2013.
  • 고순정, 김홍기, Standardized Gastroscopy Report based on Collaborative HL7 and openEHR, 대한의료정보학회 추계학술대회 2013.
  • 양상원, 김보람, 남세진, 김홍기, The Evaluation of the Understanding of Growth Charts, 대한의료정보학회 춘계학술대회 2013.

Bioinformatics

  • Nansu Zong, Sungin Lee, Jinhyun Ahn, Hong-Gee Kim. Supporting inter-topic entity search for biomedical Linked Data based on heterogeneous relationships. Computers in Biology and Medicine, Volume 87, 1 August 2017, Pages 217–229. link
  • Kyungsik Ha, Hong-Gee Kim, Hwajin Lee. Chromatin marks shape mutation landscape at early stage of cancer progression. npj genomic medicine, 2, 9 (2017). link
  • Sejin Nam, Senator Jeong, Sang-Kyun Kim, Hong-Gee Kim, Victoria Ngo, Nansu Zong. Structuralizing biomedical abstracts with discriminative linguistic features. Computers in Biology and Medicine, 1 December 2016, Volume 79, pp 276-285. link
  • Junho Park, Min-Ji Kim, Eung-Hee Kim, Sungkwon Yang, Sungin Lee, Jin-Muk Lim, Hyunwhan Joe, Kyung-Sik Ha, and Hong-Gee Kim, 'BiDIP: a Biological Data Integration Platform for Transcriptome Analysis', In: Proceedings of the First International Workshop on Biomedical Data Integration and Discovery (BMDID 2016). link
  • Ye Eun Kim, Yeon Hyeong Kim, Jee Young Kim, Ji Hye Kim, Young Jun Park, Seung Chan Shin, Jin Muk Lim, Hyun Jean Lee, Soo Jin Jun, Hong Gee Kim, A Study on Protein Networks Visualization Using Dynamic Infographics, Journal of Design Convergence Study, 51 Vol.14 no.2, 89-104 April 2015. link
  • Taek-Chin Cheong, Eon Pil Shin, Eun-Kyung Kwon, Ji-Hye Choi, Kang-Kyun Wang, Prashant Sharma, Kyong Hoon Choi, Jin-Muk Lim, Hong-Gee Kim, Keunhee Oh, Ju-Hong Jeon, Insuk So, In-Gyu Kim, Myung-Sik Choi, Young Keun Kim, Seung-Yong Seong, Yong-Rok Kim, Nam-Hyuk Cho. Functional Manipulation of Dendritic Cells by Photoswitchable Generation of Intracellular Reactive Oxygen Species. ACS Chemical Biology Article ASAP.DOI:10.1021/cb5009124 Publication Date (Web): December 2, 2014. 2015, 10 (3), pp 757–765. link
  • Gayathri Nadarajan, Kyungsik Ha and Hong-Gee Kim. Modelling Mutation Analysis for Epigenomics with Planning and Semantics. The 5th Joint International Semantic Technology (JIST) conference, November 11-13, Yichang, Hubei. (SEMBI Workshop)
  • Jun-Ho Park. Kyung-Sik Ha. Hong-Gee Kim. The 24th KOGO Annual Conference 2015, Integration of PPIs Database Using PSI-MI Format, September 9, 2015.
  • Jung Nyeo Chun*, Jin Muk Lim*, Young Kang*, Eung Hee Kim, Young-Cheul Shin, Hong-Gee Kim, Dayk Jang, Dongseop Kwon, Soo-Yong Shin, Insuk So, Ju-Hong Jeon. A network perspective on unraveling the role of TRP channels in biology and disease. (Pflugers Arch - Eur J Physiol, DOI 10.1007/s00424-013-1292-2.16 May 2013)February 2014, Volume 466, Issue 2, pp 173-182 . link
  • Se-Jin Nam, Jinhyun Ahn, Jin-Muk Lim, Jae-Hong Eom, Ju-Hong Jeon, and Hong-Gee Kim, Federating Heterogeneous Biological Resources on the Web: A Case Study on TRP Channel Ontology Construction. The 3rd Joint International Semantic Technology (JIST) conference, November 28-30, 2013, Seoul, Korea. link
  • 이그리미, 하경식, 전주홍, 김홍기, Measurement model design of the degree of evolution of TRP channels, 대한의료정보학회 추계학술대회 2013.
  • 하경식, 전주홍, 김홍기, Microarray analysis of the response for cyclosporin A in prostate cancer, 대한의료정보학회 추계학술대회 2013.
  • 박준호, 임진묵, 김홍기, Microarray analysis for the human carotid atheroma in hypertensive patients, 대한의료정보학회 추계학술대회 2013.
  • 임진묵, 천정녀, 강영, 김응희, 신영철, 장대익, 권동섭, 신수용, 서인석, 전주홍, 김홍기, A network perspective on unraveling the role of TRP channels in biology and disease, 대한의료정보학회 추계학술대회 2013.
  • 박미정, 임진묵, 김홍기, Protein Interaction network Exchange by ALK Fusion in Non Small Cell Lung Cancer, 대한의료정보학회 춘계학술대회 2013.
  • 임진묵, 김홍기, Development and Extention of TRP Channel Ontology, 대한의료정보학회 춘계학술대회 2013.
  • 이그리미, 하경식, 김홍기, TRP Channel Analysis by Hierarchical Clustering, 대한의료정보학회 춘계학술대회 2013.
  • 하경식, 임진묵, 김홍기, Development of Micro-array Analysis Automation System, 대한의료정보학회 춘계학술대회 2013.